Research

The research in my group is mostly related to cancer and stem cells. In addition, to help other researchers, we might get involved in the analysis of other types of data including RNAseq and Microarray in microbiology and plant science. We are interested in transcriptome network analysis and gene expression under different conditions in various organisms. As documented in our published works, we have designed and implemented numerous pipelines to obtain and analyze available high-throughput data.

Selected Publications

2022

The regulatory landscape of neurite development in Caenorhabditis elegans

Rasoul Godini, Hossein Fallahi, Roger Pocock

Frontiers in Molecular Neuroscience  ·  25 Aug 2022

Neurogenesis Reglatory program C elegans

Dynamics of transcription regulatory network during mice-derived retina organoid development

Rasoul Godini, Hossein Fallahi

Gene  ·  01 Mar 2022

GRN WGCNA Retina development Organoid development

2021

Survival prognostic factors in patients with acute myeloid leukemia using machine learning techniques

Keyvan Karami, Mahboubeh Akbari, Mohammad-Taher Moradi, Bijan Soleymani, Hossein Fallahi

PLOS ONE  ·  21 Jul 2021

DATA mining ML AML Machine Leraning survival analysis cancer

2019

Attribute selection and model evaluation for the maternal and paternal imprinted genes in bovine ( Bos Taurus ) using supervised machine learning algorithms

Keyvan Karami, Saeed Zerehdaran, Ali Javadmanesh, Mohammad Mahdi Shariati, Hossien Fallahi

Journal of Animal Breeding and Genetics  ·  01 Dec 2019

Imprinting Data mining Machine learning Random Forest ML

Regulatory networks upon neurogenesis induction in PC12 cell line by small molecules

Nafiseh Falsafi, Tahereh Soleimani, Hossein Fallahi, Mehri Azadbakht

Journal of Cellular Physiology  ·  01 Dec 2019

iPSCs Netwrok analysis RNA-seq Direct Conversion

Dynamics changes in the transcription factors during early human embryonic development

Rasoul Godini, Hossein Fallahi

Journal of Cellular Physiology  ·  01 Dec 2019

Development Netwrok analysis TF Dynamics

System-level responses to cisplatin in pro-apoptotic stages of breast cancer MCF-7 cell line

Hossein Fallahi, Rasoul Godini

Computational Biology and Chemistry  ·  01 Nov 2019

Development Netwrok analysis TF Dynamics